rs30904446 SNP Detail

Summary

• ID
  rs30904446
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108043974 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCAAAGCCC TACTCCACCC
  TTCAACCCCT CAGACCATGG CCTAAGTTGC TTATGGAATA GGGAAAGACC AAAGATGCTG
  GCAGAGGGGT GCCCCCTCGG ATGTCAGACT TAAGAGTATG ACTTCAGCAT CTTACCTACT
  CCACAGAGTT TGTTGTTTTC GAAGTGAAAA TAACTTTAAA ATTGTATAGC TTTCCCCCAT
  M
  CAGAATAAGA ACAAATTAGG GCTGCTCTTT CTTCCTTCTA GGATTTTATG AGCAGAAAAT
  GGGATAATAC ATTCTATAGC AGATTTCAAA AGGTGAAGCA GGATTTCAAT GTGAGAAATA
  GCGCCCTCTC ATCTATGACT CATAGCCAGC AACACACATC TGCATTTGCA TTGACAGTTT
  ATTAATAACA CAAGTAGATA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45978087	mCV24061038	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	C	C
ss133494247	ENSMUSSNP1121244	ENSEMBL	ENSEMBL_Sanger	f	SNP			A		C
ss321891483	CHEV_6_108017007	CHEVERUD	SCREENING_POP	f	SNP						A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30904446					SNP	A	A	A	C	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108043974 () rs orientation: forward

Symbol	Name	Function Class
Rr399804	regulatory region 399804	1820 bp downstream
Rr399805	regulatory region 399805	1513 bp downstream
Rr399806	regulatory region 399806	993 bp downstream
Rr636029	regulatory region 636029	1958 bp distal
Rr636030	regulatory region 636030	1694 bp distal
Rr636031	regulatory region 636031	1189 bp distal
Setmar	SET domain without mariner transposase fusion	Intron
Tssr58052	transcription start site region 58052	1960 bp downstream