rs30904418 SNP Detail

Summary

• ID
  rs30904418
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:121932993 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAATGAGTGG ATGATTCCCA GAGTCCATGT GTTGTAAGAG
  AAGGGTTCAG GCATGGGAGT TAGGGAAGCA TGGTTTGTTT CTTAGCCTCT AAGCCTTCTT
  Y
  ATTTTCTTTC CTGGTGTTGA GAAGAGCAAC ACCTAATTAT AGCATTATCA TGAGAATTCA
  AAAAAATAAT GTGGTCATGA ACTATGTAGG ACTAGAGGC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45479790	mCV23983505	ABI	CRAMUS_MOUSE	f	SNP		C				C		T
ss51021584	NES13907219	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C		C	T	C	C		T	C	C	C		C
ss135735592	ENSMUSSNP5560981	ENSEMBL	ENSEMBL_Sanger	f	SNP								T
ss320908750	CHEV_3_121842262	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30904418					SNP	C	C	C	C	C	C	C	T	C	C	C	T	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51021584	NES13907219	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121932993 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Abca4	ATP-binding cassette, sub-family A member 4			Intron
				Noncoding-Transcript-Variant
Gm43158	predicted gene 43158			within coordinates
Rr584243	regulatory region 584243			1417 bp proximal
Rr584244	regulatory region 584244			1675 bp proximal