rs30904401 SNP Detail

Summary

• ID
  rs30904401
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:14953284 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTGA AGTGTCCTCA GGGACTGTCA
  K
  ATATGTAGGG CATCAGGCAA GGTGC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45479396	mCV23564273	ABI	CRAMUS_MOUSE	f	SNP	G	T	G	T
ss134618315	ENSMUSSNP4499880	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T		T
ss320667961	CHEV_3_14888224	CHEVERUD	SCREENING_POP	f	SNP					G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30904401					SNP	G	T	G	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:14953284 () rs orientation: forward

Symbol	Name	Function Class
Car2	carbonic anhydrase 2	Intron
Cpgi12992	CpG island 12992	1010 bp distal
Rr573722	regulatory region 573722	1786 bp distal
Rr573724	regulatory region 573724	650 bp distal
Rr573725	regulatory region 573725	1717 bp distal
Rr573726	regulatory region 573726	1034 bp distal
Rr573727	regulatory region 573727	981 bp distal
Rr573728	regulatory region 573728	799 bp distal
Rr573729	regulatory region 573729	414 bp proximal
Rr573730	regulatory region 573730	845 bp proximal
Tssr826	transcription start site region 826	1904 bp downstream
Tssr827	transcription start site region 827	1797 bp downstream
Tssr828	transcription start site region 828	1741 bp downstream
Tssr829	transcription start site region 829	1655 bp downstream
Tssr830	transcription start site region 830	1609 bp downstream
Tssr831	transcription start site region 831	1576 bp downstream
Tssr832	transcription start site region 832	1503 bp downstream
Tssr28466	transcription start site region 28466	1524 bp downstream
Tssr28467	transcription start site region 28467	1365 bp downstream
Tssr28468	transcription start site region 28468	808 bp downstream