rs30903632 SNP Detail

Summary

• ID
  rs30903632
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:51326334 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TATAA TAATAAATAA ATAAATATTT
  W
  AAAAAAAAAG GAATAGAGAC ATTGC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45478316	mCV22575731	ABI	CRAMUS_MOUSE	f	SNP	A	T	T
ss135173256	ENSMUSSNP775343	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T
ss320762674	CHEV_3_51222835	CHEVERUD	SCREENING_POP	f	SNP				T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs30903632					SNP	A	T	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:51326334 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13139	CpG island 13139			1950 bp distal
Gm50622	predicted gene, 50622			within coordinates
Naa15	N(alpha)-acetyltransferase 15, NatA auxiliary subunit			Intron
				Noncoding-Transcript-Variant
Rr576316	regulatory region 576316			1513 bp distal
Rr576317	regulatory region 576317			1185 bp distal
Tssr29056	transcription start site region 29056			519 bp downstream