rs30903386 SNP Detail

Summary

• ID
  rs30903386
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:102112743 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGAC CGATTGAGAC CACTTCCCTC
  R
  CTAAGCTTCC TTTCCCTGTC TGGAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46456475	mCV22785387	ABI	CRAMUS_MOUSE	f	SNP	A	G	G
ss135554863	ENSMUSSNP6076233	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		G
ss320854837	CHEV_3_102009350	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30903386					SNP	A	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:102112743 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13625	CpG island 13625	414 bp distal
Gm16160	predicted gene 16160	within coordinates
Rr582207	regulatory region 582207	1475 bp distal
Rr582208	regulatory region 582208	1372 bp distal
Rr582209	regulatory region 582209	745 bp distal
Rr582210	regulatory region 582210	244 bp distal
Tssr34830	transcription start site region 34830	780 bp upstream
Vangl1	VANGL planar cell polarity 1	734 bp upstream