rs30903013 SNP Detail

Summary

• ID
  rs30903013
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:151896886 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCAGATGTT AAAAGAATTT
  CACAACTTGA ATAAACAGTA TTAACGGTTC TCTTAATTGT AAATGTGGAC AGTCTAGATT
  TCTGTTACTA TTGGAGAGGC CTACAGACTC AGGAACACAA GCACGGACAA TGCGAAGGAG
  AGAAAGGAGA AAAGCTTCCT CACACAGAAC CTCCAGGCCA TGAGGGTGGG GTGCTGCGGA
  Y
  TGAGAGCGGG GCTCTGCATG CTTAGCTAGT GCTGTGGCCC TGAGCTACAA CTCCTCCTAA
  GCCGACAGAG CTTTGCAGTC ACTGTGTGCT AGGTTACCAA ATAGTAAGAA ACAGAAGAGC
  TCAACAGTCT TCACTCTCCT ATATTTTCAG GTAGCTAATA ACTACAGAGT ATTTCTGAAT
  AATAAATTTC AACACTTTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45477976	mCV22364099	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	T	T
ss136101297	ENSMUSSNP1914111	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T		T
ss321028363	CHEV_3_151854213	CHEVERUD	SCREENING_POP	f	SNP						C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30903013					SNP	C	C	T	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151896886 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dnajb4	DnaJ heat shock protein family (Hsp40) member B4			Intron
				Noncoding-Transcript-Variant
Gm64624	predicted gene, 64624			1080 bp upstream
Rr587480	regulatory region 587480			1541 bp distal
Rr587481	regulatory region 587481			within coordinates
Rr587482	regulatory region 587482			577 bp proximal
Rr587483	regulatory region 587483			590 bp proximal