rs30902822 SNP Detail

Summary

• ID
  rs30902822
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:26691777 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GAAACTCAC ACATAGCAGG TGCATTCAGA
  GAGAAGGCTG GGGAGGTGCC GTAGCTCCCC GATGGTGGGC CGAGCCTGGA GGCACGTGGT
  CCGCTAAATG GGCGGGGCCA CGTGGCTGGT CGtttttttt tttttttttt tttttttACT
  Y
  CTAAGAGCTC TCTGAAGCTC CACAGCAGGT TGGCCTGGGA TTGGGACCGT TGGCACGACA
  GATGCTGTAG GTGGTAGTCA CTCGGCTCCT CTGACCCTAA ACCACACAGG TAGGAAGAGG
  CTGCTTTACC CTAAGAACAA AGCAGTTGGC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss45478493	mCV24231317	ABI	CRAMUS_MOUSE	f	SNP	C	T
ss320687941	CHEV_3_26536550	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs30902822					SNP	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:26691777 () rs orientation: forward

Symbol	Name	Function Class
Gm65182	predicted gene, 65182	74 bp upstream
Gm65438	predicted gene, 65438	1180 bp downstream
Rr574324	regulatory region 574324	1585 bp proximal
Rr574325	regulatory region 574325	1819 bp proximal
Spata16	spermatogenesis associated 16	mRNA-UTR
Tssr28597	transcription start site region 28597	within coordinates
Tssr28598	transcription start site region 28598	18 bp upstream