rs30902173 SNP Detail

Summary

• ID
  rs30902173
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:94982057 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCACAGAGG ACCGTATGTG
  GACTCCTGTT AGGGAAGAGC TTTGTATTAC TACGTGCTGT GGGGAGCTGG GCCCCTTCAA
  ACGTTTAATC ATCTGATAAA GAATATAACT ACCTGGGCAG TGGTGGTGCA CGCCTTTAAT
  CCCAGCACTT GGGAGGCAGA GGCAGGCGGA TTTCTGAGTT CGAGGCCAGC CTGGTCTACA
  R
  AGTGAGTTCC AGGACAGCCA GGACTACACA GAGAAACCCT GTTTTGAAAA ACAAACAACA
  ACAACAAATA TATATATATA AAACAAAAAT TCAGAGTCTG ATTTGACTGT ATAGTTATAG
  AAGCTTTGGT CCTTTAAAAG AAGGGCAACT GTTTCTTCTA AGAACATGAA AGTAGTTAAA
  AAAAACAAAA AACCCAACAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45478106	mCV24558412	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	G	G
ss135509826	ENSMUSSNP5683685	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30902173					SNP	A	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:94982057 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pip5k1a	phosphatidylinositol-4-phosphate 5-kinase, type 1 alpha			Intron
				Noncoding-Transcript-Variant
Rr580809	regulatory region 580809			1493 bp distal