rs30901461 SNP Detail

Summary

• ID
  rs30901461
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:67338100 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCGTTATCC AGTGGTCCTC
  TTACTACTGG GTGTGGTTGG ATGCTCTCTG AACGTGTGGG TTCTATTCAA CATCCCGGTA
  CTCTTCTCTG GCCAAGTTTC CCAGTCAGGT GTATAGATTA AACTTTGTAA GTCTTTGGAG
  TGAGGTACTC AGAGCAGGGA AGCCGTTGGT AGATGTGACC TCTTACCTGT CATGGATACC
  W
  CGTTTGCTTT GCTACCAAGT GTTCCTGTGG TTTAACCATC CAAGCGCTTG TCAGCTGTCT
  TCTTTGACAT GTGCCCAGTT TCCCTCTACC CAGAAGTGTT TGCCAAGCGT TTGGGTGTGC
  AGTTTTGTTT TGATTCAACA AATACATCCC CCTCCACCCC CCACTGTAAA GCTGACAGGA
  ACACCACCAC CCCAAAAGGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46995944	NES10783996	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30901461					SNP	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46995944	NES10783996	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:67338100 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13245	CpG island 13245			134 bp distal
Gfm1	G elongation factor, mitochondrial 1			Intron
				Noncoding-Transcript-Variant
Rr577916	regulatory region 577916			1256 bp distal
Rr577917	regulatory region 577917			661 bp distal
Rr577918	regulatory region 577918			719 bp distal
Tssr29439	transcription start site region 29439			583 bp downstream