rs30901322 SNP Detail

Summary

• ID
  rs30901322
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:86994126 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGGG ATCTAGCGCC CTCTTCTGGT
  Y
  TCTTTAGACA CTGCATGTGC ATATA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45975817	mCV22631702	ABI	CRAMUS_MOUSE	f	SNP	T	T	C
ss133361326	ENSMUSSNP2776156	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
ss321848116	CHEV_6_86967138	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs30901322					SNP	T	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:86994126 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nfu1	NFU1 iron-sulfur cluster scaffold			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr633575	regulatory region 633575			345 bp distal
Rr633576	regulatory region 633576			within coordinates
Rr633577	regulatory region 633577			within coordinates