rs30900376 SNP Detail

Summary

• ID
  rs30900376
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:67336994 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACAGCTTTC TGCCTGCATG
  TATACCTTGC AGGCCAGAAG AGGGCACCAG ATCTCATTAC AGATGGTTGT GAGCCACCAT
  GCGTTTGCTG GGAATTGAAC TCAGGACCTC AGGAAGAGCA GACCTCTTAA CCTCTGAGCC
  GTATCTCCAG CCCCTCCCCC AGATTCTCTG ATGCTGTAGT AATGAATACA TTTTTGTGTA
  Y
  TCCTTCCATT TAAATTGTTA TAAACGTTTT CCCATTGTCA TGCAGGTAAA ACAACTATGT
  TTAAAATCTG CAGCTTTTGT TTTGTTTTGT TGAAACAGGT TCTCACTGTC TAGTCCTGTC
  TGGCCCAGAA TTCTTTGCTG ACCAGGCTAT CTTGGAACTC ATTAGAGATC CGCCTAGTTC
  TGCCTCTGAA GTGTTCTTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46995926	NES10784003	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30900376					SNP	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46995926	NES10784003	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:67336994 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13245	CpG island 13245	285 bp proximal
Gfm1	G elongation factor, mitochondrial 1	454 bp upstream
Rr577916	regulatory region 577916	150 bp distal
Rr577917	regulatory region 577917	within coordinates
Rr577918	regulatory region 577918	366 bp proximal
Tssr29439	transcription start site region 29439	440 bp upstream