rs30899689 SNP Detail

Summary

• ID
  rs30899689
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108817444 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCTCCAGTT TGTTTGAGAA CTGTACTATT CAAGGGCATA
  CCCTTAGAAT AGATTTTGGA CAAAATTAGG TTATTAATTT TGTGAAAATA TTTATTAAGT
  R
  AAAATATTCG CTTAAACAAA AATCTGCAGT CCTACTATGT ACCACTTACT GTCAAGTGTG
  GAGGAGAGTA CAACAAATAG GAATGATAGC ATCTCTGTC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45975990	mCV24063880	ABI	CRAMUS_MOUSE	f	SNP	G	G	A
ss133510267	ENSMUSSNP3619096	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs30899689					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108817444 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Edem1	ER degradation enhancer, mannosidase alpha-like 1			Intron
				Noncoding-Transcript-Variant
Rr368141	regulatory region 368141			701 bp downstream
Rr636222	regulatory region 636222			508 bp distal
Tssr58120	transcription start site region 58120			1261 bp downstream