rs30898050 SNP Detail

Summary

• ID
  rs30898050
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:68952550 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCCCCGTGAG GCTCCGGTCC TCCAACTTAG GCGCGCCTAA
  GCCTTCATCT GTGTCCTCCC TGTCCTCTCT AACACGCTGG GTCAGAAAAC ACAGTAGTGG
  Y
  TTTTCACTTT CTCGGAGAAA CGCCATTCCA GAGCTCAGAC CGCTCTCCGC TCCCGGCCGG
  TGTGAGCTAC AGAGCAGATT CCAAGTCAGC CTAAGACTC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45476378	mCV25236922	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C	T
ss135264691	ENSMUSSNP2628886	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T		T
ss320791800	CHEV_3_68849139	CHEVERUD	SCREENING_POP	f	SNP						T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30898050					SNP	C	C	T	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:68952550 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13256	CpG island 13256	within coordinates
Gm65005	predicted gene, 65005	within coordinates
Rr578118	regulatory region 578118	473 bp distal
Rr578119	regulatory region 578119	85 bp distal
Rr578120	regulatory region 578120	314 bp distal
Rr578121	regulatory region 578121	within coordinates
Rr578122	regulatory region 578122	126 bp proximal
Rr578123	regulatory region 578123	1291 bp proximal
Trim59	tripartite motif-containing 59	475 bp upstream
Tssr29529	transcription start site region 29529	130 bp downstream
Tssr29530	transcription start site region 29530	81 bp downstream
Tssr33523	transcription start site region 33523	558 bp upstream
Tssr33524	transcription start site region 33524	550 bp upstream
Tssr33525	transcription start site region 33525	454 bp upstream
Tssr33526	transcription start site region 33526	243 bp upstream
Tssr33527	transcription start site region 33527	218 bp upstream