rs30897754 SNP Detail

Summary

• ID
  rs30897754
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:151837179 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  ACAGGGGTCA CCTAAGACCA TTGGAAAGCA CAGATATTTA CATTATGATT CATAACAATA
  GCAACACTAC AGTTTCGAAG CAGCAATAAA ATAATTTTAG GTTTGGGAGT CACCACAACA
  GGAGTAACTG GACTAAAGGC CACTGGTCTA TAGGCATCTG ATGGAGGCAC TTTCTCAGCA
  TAGGTTCCTC TTCCCAGATA ACTCTAGCTT GTATAAAGCT GACGAAAGAA AGAGAGAAGG
  AAGGAAGGAA GGAAGGAAGG AAGGAAGGAA GGAAGGAAGG AAGGAAAGAA AGAAGAAAAG
  R
  GAAGAGAAGG GAAGGGAAGG GAAGGGAAGG GAAGGGAAGG GAAGGGAAGG GAAGGGAAGG
  AAAGGAAAGG AAAGGAAAGG AAAGGAAAGG AAAGGAAAGG AAAGGAAAGG AAAGGAAAGG
  AAAGGAAAGG AAAGGAAAGA ACAAGTAAGA ATGAGCAATA TCTCGGTCAG CGCAAGTGTT
  GGCTATGTCT GCAAGCATGG GTATATAAAG TCCAGGAGTG GTGTGTGTGT GTGTCTAATC
  CCAGCTTGGA GAGGCTGAAG CAAGAGGACT CCTGGAACTT GCCCAGATCC CAGTGAGAGA
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45477366	mCV23509597	ABI	CRAMUS_MOUSE	f	SNP	G	A	A
ss136101057	ENSMUSSNP5114548	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs30897754					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151837179 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gipc2	GIPC PDZ domain containing family, member 2			Intron
				Noncoding-Transcript-Variant
Rr587462	regulatory region 587462			128 bp distal
Rr587463	regulatory region 587463			1991 bp proximal