rs30896413 SNP Detail

Summary

• ID
  rs30896413
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:18432910 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAAAGTGCA TGCTATTTCT
  GATTCTCAGT TTTGCCCTCG AGAATAAAAA CAACTTCCCC TAAAGCTGAA TTTCCATGGA
  ATCTGCTTGG AATTAGAAGC ATGCAGACTG GCAATCTGAA GCACTTAGCT CCTTCACTGG
  TGGCCGGCTT CAGTCTGTGC TCCATGCTTT AAGTTTTAAA GGTGACCCTA CTGATATTTC
  Y
  CTTTCGTGTT TAAATTTCTG CTCTTTAGAG CCAGTAGGAT CTGCCAATCC CTAATGTCTG
  ACGAGAGTAG CACAGATTGC TCCAGAGTGC CAACAGAGCT CTGACCCTAA TCATGAATCA
  ACTTTAGCCA TGATAATGAA AAAGCAATTC TTTCATAACT ATATACAGCC ACGACAACAT
  CTAGTCCTTT GTGGGACTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45975019	mCV23958993	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30896413					SNP	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:18432910 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cttnbp2	cortactin binding protein 2			Intron
				Noncoding-Transcript-Variant
Gm43843	predicted gene 43843			1666 bp upstream
Rr626922	regulatory region 626922			1636 bp proximal
Rr626923	regulatory region 626923			1831 bp proximal