rs30896357 SNP Detail

Summary

• ID
  rs30896357
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:100456887 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCCAATTC TGCCACTAGA
  TATGCAATTC TAGGTTAATA TCTATTTCCC CCAACATTTA TGTGTCTCTG TTGCTGTGGT
  GAGAAGTCAG CTGCCATTGT AATTCTAACT GCCCTCTTCT GTAAGCAGTT GCCCTTTTTA
  TTCCTGGCTG TCTTGAAGAT GTGTTGCCAT TTAATTGTAG TGTATCTAGG CACGGATTTC
  Y
  TTTTGTTTGT CCCATTTAAG ATACATTATA CTTCCTGGGT CTGAGGACTC ATCTCTGTTT
  CCAGTCTTTG TTATACTCTC CTTCTACACT GCCTTGTGTC CGCTCTGTGT GCCTTCAGGA
  TTCCAATCAG ACATGCTAAC CTTCTCAGGT ATTTTGGCTC TTACCCTCAC TTTCATCCCC
  CTGCCTCATC CCCCACCCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45477610	mCV23817993	ABI	CRAMUS_MOUSE	f	SNP	T	C	T
ss135540186	ENSMUSSNP4384724	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss320849130	CHEV_3_100353494	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs30896357					SNP	T	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100456887 () rs orientation: forward

Symbol	Name	Function Class
Gm54212	predicted gene, 54212	within coordinates
Rr581870	regulatory region 581870	1386 bp distal
Rr581871	regulatory region 581871	1738 bp distal
Rr581872	regulatory region 581872	1216 bp proximal