rs30894926 SNP Detail

Summary

• ID
  rs30894926
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:87080855 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGCAAGTGTG TGTCAGCTTA GAAGAGGAAT CTTCCTTCTT
  CAGAGGTGTC AATCAGTGTC TTTGTGTATG TGTCTGTCTC CATGTGTGTG TGTGTGTGGG
  K
  GGTGGGGGGG TCTCCTTAGG TGAGTAGTCT GTCTCCATGT CTCTGTTGGA AGCTATCTGT
  GTGTCTGATT TCTGTGCTCC AGTTCAGGCG AGGGGCTCG                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	DBA/2J
ss45476146	mCV24904436	ABI	CRAMUS_MOUSE	f	SNP	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	DBA/2J
rs30894926					SNP	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87080855 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13330	CpG island 13330	661 bp proximal
Gm64310	predicted gene, 64310	within coordinates
Kirrel1	kirre like nephrin family adhesion molecule 1	Intron
Rr579454	regulatory region 579454	882 bp distal
Rr579455	regulatory region 579455	119 bp proximal
Rr579456	regulatory region 579456	620 bp proximal
Rr579457	regulatory region 579457	992 bp proximal
Tssr33927	transcription start site region 33927	910 bp downstream
Tssr33928	transcription start site region 33928	970 bp downstream
Tssr33929	transcription start site region 33929	1084 bp downstream
Tssr33930	transcription start site region 33930	1109 bp downstream