rs30894688 SNP Detail

Summary

• ID
  rs30894688
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:60522234 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TTGTTATTCG TTGTATATGG CATTCCGATG ATTTGTTTTT TTATTTGTTT TTTCTCACCT
  ACCCAAAATG CACTGCTGCC CCCATGATGC ACCTCTGCTT GCTGTTTATG TTAATGCGCT
  TGAACCCCAC TGGCCCATTG CCATCATGTG CTCGCTGCCT GCTAATTAAG ACTCAGTCGG
  CTGTCAAATC ACTGAAGCGA CCCCTCGAGG CAACCTTTGA CCTGGTACTA TGACCTTTCA
  CCTTTTAGCT TGGCATGTAG CTTTATTGTA GATACAGGTT TTTTTGGTTT TTGTTTTTGG
  W
  TTGGTTTGGT TTTGGTTTTG TTTTGTTTTG TTCTGTTCTG TTTTGTTTTT AACTGATTGA
  AATAGATATA ATCCTTTTCC TGTTTAAAGT GGTTAAGTAC AATGAAAATC TGAGTGTGGT
  TTCCTGAAAA AATGAGCAGA AAGACCTAAA ATGCATACAT AGATGGATAA GGTACAATGA
  AAGACTGGAA TCCCAGCAGC CCACATTCAG TTTAACTATA TTGTAAAACG TTCTAATGAA
  AGACTCGGAG GACGATAAAG TGTGGTGTTC ACTCTATATT TATGTACCTG TGTGGTTAGC
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45477134	mCV23104296	ABI	CRAMUS_MOUSE	f	SNP	T	A	T	T
ss135219905	ENSMUSSNP5565046	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30894688					SNP	T	A	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:60522234 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mbnl1	muscleblind like splicing regulator 1			Intron
				Noncoding-Transcript-Variant
Rr577443	regulatory region 577443			165 bp proximal
Rr577444	regulatory region 577444			1443 bp proximal
Tssr29315	transcription start site region 29315			379 bp downstream