rs30894442 SNP Detail

Summary

• ID
  rs30894442
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:125198564 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTGCCCTG CTGTAAAAAG
  GGAACTGAAC AGCAGATTAA TTTTAAACAG TTACTCTGAC ATTTGCACCA AAACACCTCC
  CTGGATAACA GGTTTGTCCT GTTTCTACTG GACCTACTAA TTTTGCAAAC TCAGCCTTCA
  GTCATAACTG TGGCTGGTGT TTAAATGTTT CCTAAGAAGT ATTACTTAGA ATGTGGCATG
  Y
  AAATTGCCCA AGATGAGAAC TCTTCTCCTT GGGACATAAG ATTTATAGGT GTTCTCTGTT
  TTGATGGAAT TTTGAGAGAA ACAGCTGGCA CACACATTTG AAACTGAACG ACACTGGCAT
  ATGCTGTTTA TCAGGAAATA GATGCTATCC CCTAGCTCAT ATTAGAAATG AAAACATCTC
  AGGGTAATAT ATGTCATATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45477594	mCV24033604	ABI	CRAMUS_MOUSE	f	SNP		T					C		C
ss61078007	NES16589256	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	T	C	T		T	C	C	C		T	C	C	T		C
ss135807836	ENSMUSSNP5196775	ENSEMBL	ENSEMBL_Sanger	f	SNP		T							C
ss320936167	CHEV_3_125107833	CHEVERUD	SCREENING_POP	f	SNP												C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30894442					SNP	C	T	C	T	C	T	C	T	C	C	C	C	T	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61078007	NES16589256	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:125198564 () rs orientation: forward

Symbol	Name	Function Class
Ndst4	N-deacetylase/N-sulfotransferase (heparin glucosaminyl) 4	Intron
Rr584608	regulatory region 584608	829 bp distal
Rr584609	regulatory region 584609	211 bp distal
Tssr31558	transcription start site region 31558	784 bp downstream
Tssr31559	transcription start site region 31559	575 bp downstream