rs30893021 SNP Detail

Summary

• ID
  rs30893021
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:26693107 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGAACACC CATCACAGAA
  AGCTTTCATT CAAAGGTGGT TCAGCCTTAG CAGTGAAAAA CAACTTTAAA TCCTTATTTA
  ATACAATTTA CATTTCATAT TCTCTACCAA TAAAATATTT ATAGGCACCA GTAAAGGTCT
  CTTTTTGAAA CACTAGGAGA GTGCTTGTCA TTTTAGTAAA GCCACTAATT TGAAGTGCTT
  R
  AAAAACGTCA CATGGGCTGA TAAATAATTT TGTATGGCCC CTTTTGATTT AGTGTTATAC
  ATACTGAAGG GCTAAAGTGA GCTTTAATGT CACACACTCC CTCGAGAACT TGGATGTACG
  AGGCGCGCTC TTTCTGGTGT ACTGTGACAC AAAACTGCTT TCTGCCACCA TGGGGTTTTT
  CAGTTTTTCT TCACCTGTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss45476028	mCV24231341	ABI	CRAMUS_MOUSE	f	SNP	G	G	G					A
ss51442534	NES14434422	PERLEGEN	MM_PANEL2	f	SNP				A	G	G	A	A	A	A		G	G	G		A
ss134696952	ENSMUSSNP2508476	ENSEMBL	ENSEMBL_Sanger	f	SNP		G
ss320687949	CHEV_3_26537880	CHEVERUD	SCREENING_POP	f	SNP											G				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs30893021					SNP	G	G	G	A	G	G	A	A	A	A	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51442534	NES14434422	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:26693107 () rs orientation: forward

Symbol	Name	Function Class
Gm65182	predicted gene, 65182	1404 bp upstream
Gm65438	predicted gene, 65438	within coordinates
Rr574324	regulatory region 574324	255 bp proximal
Rr574325	regulatory region 574325	489 bp proximal
Rr574326	regulatory region 574326	1198 bp proximal
Spata16	spermatogenesis associated 16	Intron
Tssr28597	transcription start site region 28597	1321 bp downstream
Tssr28598	transcription start site region 28598	1298 bp downstream