rs30892718 SNP Detail

Summary

• ID
  rs30892718
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:107347327 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTACATAG CTGAGCAGAG
  AGGTATGGTG GTGGTGGGGA ATCCCTGATG TGGACTATGG CTTATGGACG ACCACTCCAG
  CTTGTCTCTA CTCAATTTGT GCACTACCCC CAAAGAGCTC CATCTGCCCT CACCACCATG
  GACAATCCCA CTATCCCAAG CAGCAAGTGA AGATGTCTCT AGAGTGTGGA GCCATGTCAC
  R
  CCCAGCCCCC GACCTCAAAG TGATAATAGA GTCCTGGGGC ATGGTGGGGG GATGTGCAGA
  GGGCATATGC CACACTGGCA CACAGCGTCC TACTAAGAAA ACCCACAACC TCAGCCTCAG
  ATATCCGAGA TCCGAGGCTT GTGTCTTTGC CTATTTTCCA GAGGTAGCAC TAGCTAGATA
  GCTAGGGAGA CTGGGCTAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45476221	mCV24802285	ABI	CRAMUS_MOUSE	f	SNP	G	A	A	A
ss135584029	ENSMUSSNP3576094	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30892718					SNP	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107347327 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
A330043J11Rik	RIKEN cDNA A330043J11 gene			330 bp downstream
Kcnc4	potassium voltage gated channel, Shaw-related subfamily, member 4			Intron
				mRNA-UTR
Rr582974	regulatory region 582974			523 bp distal