rs30890497 SNP Detail

Summary

• ID
  rs30890497
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:118622428 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTATGGGTTA AGTTCCTTTC AGGGGACTCA GGAGCTTGTC
  CCCCTCTGCC TTAGCTGTGC CAGGGTAGAC TAGAGGAGCA CATTATTGCT TTTCCCTACC
  M
  ATGCTAGAAT AAATGAACAG ATTTATGCAA AAAGACATGA TTGGAGTGCT GAAGGCTGTA
  TCCCTGGAGC CAGCCATGGC AAAGAGCTTC AGGTTCAAG                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45974371	mCV27570598	ABI	CRAMUS_MOUSE	f	SNP	A	A	C	C	A
ss133584715	ENSMUSSNP1146999	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	C		A
ss321925739	CHEV_6_118595485	CHEVERUD	SCREENING_POP	f	SNP						A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30890497					SNP	A	A	C	C	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:118622428 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cacna1c	calcium channel, voltage-dependent, L type, alpha 1C subunit			Intron
				Noncoding-Transcript-Variant
Rr637500	regulatory region 637500			336 bp distal
Rr637501	regulatory region 637501			1092 bp proximal
Rr637502	regulatory region 637502			1370 bp proximal