rs30888783 SNP Detail

Summary

• ID
  rs30888783
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:104723787 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGGG AACCTGAGGC CGGAGACCCA
  Y
  TTAAGTTTGA AAGTTTGAGG CCAAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45475030	mCV25249343	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	T
ss135571437	ENSMUSSNP6754926	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30888783					SNP	C	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:104723787 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13652	CpG island 13652			979 bp proximal
Mov10	Mov10 RISC complex RNA helicase			Intron
				Noncoding-Transcript-Variant
Rr375522	regulatory region 375522			within coordinates
Rr582621	regulatory region 582621			82 bp distal
Rr582622	regulatory region 582622			1143 bp proximal
Rr582623	regulatory region 582623			1761 bp proximal
Tssr34894	transcription start site region 34894			1611 bp downstream
Tssr34895	transcription start site region 34895			1635 bp downstream
Tssr34896	transcription start site region 34896			1707 bp downstream
Tssr34897	transcription start site region 34897			1753 bp downstream
Tssr34898	transcription start site region 34898			1795 bp downstream
Tssr34899	transcription start site region 34899			1851 bp downstream