rs30886832 SNP Detail

Summary

• ID
  rs30886832
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:72284910 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGGG GGCAGCGTTT GGGGTGTAAA
  K
  GAATAGATAA ATGCCTTTAA AATGA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45974605	mCV25198418	ABI	CRAMUS_MOUSE	f	SNP	G	G	T
ss133283808	ENSMUSSNP2499309	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		T
ss321821417	CHEV_6_72257920	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30886832					SNP	G	G	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72284910 () rs orientation: forward

Symbol	Name	Function Class
Rr632127	regulatory region 632127	542 bp proximal
Sftpb	surfactant associated protein B	Intron
Tssr57086	transcription start site region 57086	1984 bp downstream
Tssr57087	transcription start site region 57087	1949 bp downstream
Tssr57088	transcription start site region 57088	1897 bp downstream
Tssr57089	transcription start site region 57089	1136 bp downstream
Tssr57090	transcription start site region 57090	1061 bp downstream
Tssr57091	transcription start site region 57091	999 bp downstream
Tssr57092	transcription start site region 57092	714 bp downstream