rs30884506 SNP Detail

Summary

• ID
  rs30884506
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:7829787 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCATTTGTG GGGATGGCAG
  GATATAGTAG GGACTCCTCA CATGGTGGTA AATCAGAAAA CATAGAAAAA ATAGGTCAAA
  ATCAGGGTGG TTATAACCTT CAAAGACCTA CCCCTTGTGA TTAGGTCCCA CCTCCTAATG
  GCCACACAGA CTCATTAACT TGAGAAGGAA GTCTGGTTTA TGTCTTCTGA AACATTATCC
  Y
  GGAAGAAGCA GAATCGCCAC AGCTTTAAGA CTGCTGCCTC TTTGTGTCTG ACTCACTGCC
  ACTGGGTCAG CCTGTGGAGG AGAACACAAG GGAAGGCAAC AAGATCACCA GGAAACTTCC
  TTAGGGCTTT CAATGGCCTA GCTCTCTGCT GTAAAGACTG GACTGTTTGC TAGGGCTTTC
  ACAAACCTGG CTAACCAGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45974099	mCV24004126	ABI	CRAMUS_MOUSE	f	SNP		C	T					T
ss60861857	NES15993151	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	T	C	T	T	T	C	T	T	C	C
ss132955714	ENSMUSSNP3690156	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30884506					SNP	C	C	T	T	T	T	C	T	T	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60861857	NES15993151	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:7829787 () rs orientation: forward

Symbol	Name	Function Class
Rr626323	regulatory region 626323	1061 bp proximal