rs30883126 SNP Detail

Summary

• ID
  rs30883126
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:63648234 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTAGTTAC CTTCACTAGG
  ATTTTGCCTT TCAGACTCTG AGGGCTTGGA AGCTGCCTGC ACTCTCCGGT GTCTACAGAA
  GACAGGTCCA GTTTGTCCTG CAATATACCT TTCAGGTACT GAGCAATCTT CCTCTGCTGC
  TGAATGCTGC AGTGGTTCTC AATGGACAGG ATAACCGGGA ACCTGAGGGA ACAGCAACAA
  W
  GCCAAGGGCG GTCAATGGCG ACAGTGCACA GGGATCTTGG AAGCCTGGAA ATAGAAACTG
  TACTCATTGC ATCATTCAAT TCCCGGGAAA CTGAATGGAC AATACTCAAA ATAAATAATG
  CTAAAAGGAG AAAGAGTAAG CATGCACTGA AGAAAAAGCT CCTCAAAGCA AATATACATT
  GCCAGGCACA ATGCTGCAGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46994550	NES10773601	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	T	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30883126					SNP	A	A	A	A	T	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46994550	NES10773601	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:63648234 () rs orientation: forward

Symbol	Name	Function Class
Plch1	phospholipase C, eta 1	Intron
Rr577587	regulatory region 577587	335 bp distal