rs30882302 SNP Detail

Summary

• ID
  rs30882302
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:134119328 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTGT CCTCAGGAAA GGCGAGAGCC
  R
  GAATACTGTT GACAGCCCTT AAGTA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49679592	NES12991825	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G		G	A	G	G		A
ss319982133	CHEV_1_136088167	CHEVERUD	SCREENING_POP	f	SNP								A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30882302					SNP	G	G	G	G	G	A	G	A	G	A	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49679592	NES12991825	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:134119328 () rs orientation: forward

Symbol	Name	Function Class
Chi3l1	chitinase 3 like 1	1559 bp downstream
Mybph	myosin binding protein H	1858 bp upstream
Rr372066	regulatory region 372066	957 bp downstream
Tssr8864	transcription start site region 8864	1858 bp downstream
Tssr8865	transcription start site region 8865	1741 bp downstream
Tssr8866	transcription start site region 8866	1842 bp upstream