rs30882118 SNP Detail

Summary

• ID
  rs30882118
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:63645886 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGGTATAA ATGTAAAAGC
  AAATGAAAAC GTAAAAAAGA ATAAAATAAG GTGAAATCTT GTATGATATA AACAACTTTA
  GTTTGAGTAG ATATAAGTGA AGGTGAACCC AGGTCTGCAT GTTACTTCAC TTATGCTCTA
  GCGTTGGGTT AATTCATCAT GTAATATGGA AACATTACCA GATCCTTTTC AACTTCAAAC
  Y
  ATAGGTGGCC CAGGGCAACA GTAACCTCAG GGGGCTGGAG AGATGGCTCA GCAGTTAAGA
  ACACTAACTG CTTTTCCAGG GGACCTGGGT TCAACTCCCA GCACCCTTTT AACAGCTTAC
  AACTCTCTAC AGTTTTAGCT ACAAGGGATC CAGCACTCTC ACACAGACAT ACAAGTAGGC
  CAAACACCAG TGTGCATGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46994540	NES10773703	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30882118					SNP	C	C	C	C	T	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46994540	NES10773703	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:63645886 () rs orientation: forward

Symbol	Name	Function Class
Plch1	phospholipase C, eta 1	Intron
Rr577587	regulatory region 577587	1578 bp proximal