rs30875502 SNP Detail

Summary

• ID
  rs30875502
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:137766209 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGATGACTG ACAGGCCACA
  GATAAGATGG ACCCAGATTT AGAGTAAGTC TATTTTAAGT TGTGTTAAAG ATTCCACCTG
  AGGGTGGTCC TCAAGGGCCA TTTTTCTCTA TATAGTCATA TCTAAAACAT TGACACCCCC
  ACAGCTCCCC CACGAGGAAG GCCAGACAGC CCCAACTGCC GGACATAAAA CATCAGGGAC
  R
  TGGAGGAATA ACAGAAGAGA AAGGGGTTGA AAAAGGCCCA AGAGGAGTTC AAACCACAAG
  AAGAAGAGGA GGGCGGCAGC CAGAGAAGAT GAGTTCCCTG ATATGCGTGC CTCCTGGCTC
  AAGCCGCAAA GTGAACAACC ACTCCACTCC ATATCTGAGC TTGTGGGCAG GCTCAAGGGC
  TGCTTACTAA GGGTTTATTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46994155	NES10876082	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30875502					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46994155	NES10876082	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:137766209 () rs orientation: forward

Symbol	Name	Function Class
Gm5105	predicted gene 5105	within coordinates
Rr586067	regulatory region 586067	within coordinates
Tssr31936	transcription start site region 31936	1467 bp upstream