rs30873557 SNP Detail

Summary

• ID
  rs30873557
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:137764735 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCAACTGTT GATTAATTTT
  TTTCTTACAT TTAGGATATG GTTTCGAATT TGTGGTGATA ACAATCTACT TAAAGTTCTA
  GTTTATCTTA AACAATTGGT TGTTGTTGTT CAGGCAGTAA GAAGGCAGGC AAAGGGAAAT
  TGTGATTTTT TTTTTTTTTT GGTTACTTTT GAGTCTTATT TCTAAGAACT TTGAATGTGG
  M
  TTTTTAAACT GCATTAATAC TACATACATG TCGAAGAAGC ATTTAATGTC TCATTTATAA
  ACCATTCTTT CTTTTCAGCT AGTAAAATTC TCCTTAAATA ATTTTGGCAG TTTGCCTCCA
  TTTATTTTAA ATACACTTCT TAACCACTGA CACCATACCA CTGGGTGCAA AGGCCCTACT
  CTCGAGTCAT TTGCTGGTTA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46994129	NES10876249	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30873557					SNP	A	A	A	A	A	A	A	A	A	A	A	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46994129	NES10876249	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:137764735 () rs orientation: forward

Symbol	Name	Function Class
Gm5105	predicted gene 5105	within coordinates
Rr586067	regulatory region 586067	1409 bp proximal