rs30873556 SNP Detail

Summary

• ID
  rs30873556
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:137764619 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTTGACTT GGAGGCACCT
  ACACGATATT CAGGCTGATC AAGAGATGGG ATTTTGTTGG AGGCAGAGGC TGGTGTGATA
  AAGGGAAAGA ACCTAAAGAT ATCTATTCTG GATTGACTCA ACTGTTGATT AATTTTTTTC
  TTACATTTAG GATATGGTTT CGAATTTGTG GTGATAACAA TCTACTTAAA GTTCTAGTTT
  R
  TCTTAAACAA TTGGTTGTTG TTGTTCAGGC AGTAAGAAGG CAGGCAAAGG GAAATTGTGA
  TTTTTTTTTT TTTTTGGTTA CTTTTGAGTC TTATTTCTAA GAACTTTGAA TGTGGATTTT
  TAAACTGCAT TAATACTACA TACATGTCGA AGAAGCATTT AATGTCTCAT TTATAAACCA
  TTCTTTCTTT TCAGCTAGTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C57BL/6J	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss45501993	mCV23605120	ABI	CRAMUS_MOUSE	f	SNP		A	G			A	A
ss46994127	NES10876248	PERLEGEN	MM_PANEL2	f	SNP	A		G	A	G		A	A		A	A	A	A
ss135947677	ENSMUSSNP4947823	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G				A
ss320978082	CHEV_3_137721822	CHEVERUD	SCREENING_POP	f	SNP									G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C57BL/6J	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs30873556					SNP	A	A	G	A	G	A	A	A	G	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46994127	NES10876248	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:137764619 () rs orientation: forward

Symbol	Name	Function Class
Gm5105	predicted gene 5105	within coordinates
Rr586067	regulatory region 586067	1525 bp proximal