rs30872319 SNP Detail

Summary

• ID
  rs30872319
• Variation Type
  SNP
• Alleles
  A/C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:147893389 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CCTAG AGAGCTTTGT AGGTATTTGT
  H
  ATATGGGGAT CAGTGCAGAT TTGAT                                      
  
  H = A/C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45597631	mCV24211614	ABI	CRAMUS_MOUSE	r	SNP	A	A		G
ss46452973	mCV25387926	ABI	CRAMUS_MOUSE	f	SNP	A	A	C	C
ss147982681	ENSMUSSNP4548500	ENSEMBL	ENSEMBL_Sanger	r	SNP			G		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30872319					SNP	?	?	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:147893389 () rs orientation: reverse

Symbol	Name	Function Class
Gm20707	predicted gene 20707	within coordinates
Rr377386	regulatory region 377386	within coordinates
Rr604501	regulatory region 604501	120 bp distal
Rr604502	regulatory region 604502	240 bp proximal
Rr604503	regulatory region 604503	846 bp proximal
Tssr44548	transcription start site region 44548	870 bp downstream
Zfp984	zinc finger protein 984	Intron