rs30869593 SNP Detail

Summary

• ID
  rs30869593
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:134424010 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACTTATTT TGTAAAGTTA
  GTGGCCTTGC GGAGGGATGG AGCTGAGCCA GGGAACTGGA TCCTGACCTG CGCACTTATT
  AACACCGGAA GAGCTGTTGA ACCTCCATGA CCTTGCGCTT GCTCCTTCTG ACCAAGTTGA
  TGAATAGGGA GATTTGGCAC TGTGAGCACA GTGCCTCCTA TATGGGACAG TTCTTGTTCT
  Y
  GAATGGCAGC TTGCCTGCTT GTGTAAATTG ACAGAAACTT AAATGTTCCC GAATGGCATG
  TGGTGGCCTG CGCCTATCTT AGCACTTAGG GCTGGCTACC CAGTGAGATC AAAGCTAAAA
  GGGGTACATA ATGAGACCCT GTCTGTGAAC TGAGTAACTC TTTTTTAAAA AGTCAAGACA
  TTTCTTAAAA GAAATTTTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49678250	NES12993949	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30869593					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49678250	NES12993949	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:134424010 () rs orientation: forward

Symbol	Name	Function Class
Cpgi770	CpG island 770	1158 bp distal
Rabif	RAB interacting factor	Intron
Rr396314	regulatory region 396314	1507 bp downstream
Rr418928	regulatory region 418928	1614 bp distal
Rr418929	regulatory region 418929	1521 bp distal
Rr418930	regulatory region 418930	1080 bp distal
Tssr8899	transcription start site region 8899	1593 bp downstream
Tssr8900	transcription start site region 8900	1509 bp downstream
Tssr8901	transcription start site region 8901	1256 bp downstream