rs30869294 SNP Detail

Summary

• ID
  rs30869294
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:156489523 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGCA CTGACTGCTC TTCCAGAGGT
  Y
  CTGAGTTCAA ATCCCAGCAA CCACA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss46452154	mCV22760040	ABI	CRAMUS_MOUSE	f	SNP	C		T
ss145801531	ENSMUSSNP3528168	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs30869294					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156489523 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr421220	regulatory region 421220			1190 bp distal
Rr421221	regulatory region 421221			709 bp distal
Rr421222	regulatory region 421222			55 bp proximal
Tor3a	torsin family 3, member A			Intron
				Noncoding-Transcript-Variant