rs30868574 SNP Detail

Summary

• ID
  rs30868574
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:137665459 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAACGAGTT AAACACTGAG
  GAAACTGTCA GGGCTGATTG TGAGGATTTC CATCCTGGAA ATTGACAGAT TGACAGCTTT
  AGGTTCACAC TCAGAACATT TTACCTCAAA CCTCGTCTTT TTGTGAGCAG CCAGTGTGTG
  GCTCCTGTGA GTTGTTCATC TGTGTGCCAG ACACTGACTC ATACTGGGGT CTGTCCCAGT
  K
  ACATAAGTGG CAACAGCAGT GATCAGTGAT GCCAGCTCAC CCCGCCACAC TGATGAGCAG
  AAAGATCACT CCAGATATTA CAAGAAAAAT GTACAGATTC ATGGCAATTA GCTGTGGCAC
  CATCTCTCGG GCTATAGATT CTTGCAGTCT TCCCATTGTT GATAAACAGA TTTTTTTTTA
  TCATTTAAAG CAAATAAGGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	LG/J	NZW/LacJ	SM/J
ss46992877	NES10880161	PERLEGEN	MM_PANEL2	f	SNP	G		T	T	G	G		G
ss135945614	ENSMUSSNP6672085	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	T			G
ss320977292	CHEV_3_137622662	CHEVERUD	SCREENING_POP	f	SNP							T		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	LG/J	NZW/LacJ	SM/J
rs30868574					SNP	G	G	T	T	G	G	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46992877	NES10880161	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:137665459 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dapp1	dual adaptor for phosphotyrosine and 3-phosphoinositides 1			Intron
				Noncoding-Transcript-Variant
Rr586035	regulatory region 586035			1121 bp distal
Rr586036	regulatory region 586036			within coordinates