rs30866568 SNP Detail

Summary

• ID
  rs30866568
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:90049897 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAAAGGGC GAGGCCTCTC
  AGAAGCCTGT GCAAATAGAT AAGGGATTGG CATGTGGTAG AATTCCATCT CCCCCAAGGC
  ATAAACATGT CCACAGCTAT GAGTCCCATA GTTATAAGTA GCATTAGTTG GGTCAGGGAG
  AGAAAAGCAA TGTAGAGATC AATGGGTTTA GGCTTGTTCT CACCAAGGAG CTTGCAGAGG
  Y
  GGGCAAAAAA GAGGATAGTG TTAGCTGAGA TCCCAACACT CACTTCAGAG AACAAGATGA
  TTTTCATGTT ATTGTCAGTG TGGAGTAAGT TTGCTTTACT CATTGTATGT AGGTAGGAAG
  CAAATAACAA AAATCTGAGG AGAAAAGAGA AAACTCTTTC TTACAAAACA TGGCCTTGTT
  CACAAATGCC AACCAACACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45973383	mCV24613552	ABI	CRAMUS_MOUSE	f	SNP	C		T					C
ss48002911	NES11895985	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	C	T	C		C	C	C	C	C		C	C	C	C
ss133375306	ENSMUSSNP1896613	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T											C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30866568					SNP	C	C	T	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48002911	NES11895985	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:90049897 () rs orientation: forward

Symbol	Name	Function Class
Vmn1r49	vomeronasal 1, receptor 49	Coding-NonSynonymous