rs30866489 SNP Detail

Summary

• ID
  rs30866489
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:145121798 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAGGATTAT AAATAGCATA
  AAGTAGGGGT CAGAAAGCTT TTGTGTAAAG GGCCAGTGAC TGAATGTTTA AAATTCTGAG
  CCATATGGGT TCTGTTGCAG GCTCTTAGCT ATGGCACTGT ACTGTGAACC CAGTCACAGA
  CAACAATGAA TGAATGAGCC TGGCTGTTTC CCGTGAAACT TTATTTATAA AAACAGACAG
  Y
  GGGCATGAAT GGGCCGCCGG CTGTAGTGTC TCTTCCTGCT CTGCCATGTT ATAGTTGTTC
  TAGGATGTGG CAGCTTTCTT GTGTCTGTCT TATGTGCACC CTGTTTTATT AATCTTTTGT
  CATTAACAAA AAAGCAATGA ACACAAATAT GATTTCTCTG TATCTTAGTT TCAAATCCAA
  AAACCAATTC AAGTTAGCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45474833	mCV23543981	ABI	CRAMUS_MOUSE	f	SNP	C	T	T
ss136038377	ENSMUSSNP5439404	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		T
ss321008278	CHEV_3_145079007	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30866489					SNP	C	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:145121798 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
9530034A14Rik	RIKEN cDNA 9530034A14 gene			within coordinates
Col24a1	collagen, type XXIV, alpha 1			Intron
				Noncoding-Transcript-Variant
Rr586779	regulatory region 586779			1871 bp proximal
Rr586780	regulatory region 586780			1991 bp proximal