rs30866165 SNP Detail

Summary

• ID
  rs30866165
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:137657695 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCACAACC ATCTGTACAG
  CTACAGTGTA CTAACATACA TAAAATAAAT CTTTAAAAAA AGATGAAAGA AGGTGTCTCT
  GATTTTGCCT CAGAGGAGGA TCCAGGCCCT CTCTGTATCC CTCCCATTCA CGTCAGTGGC
  ACCGGGCTCC CAGTGACAAA TGGCTTGACA GTTATCAGAG GGCACAGTCT GCTCTTGCAC
  K
  TTGCCTGTGC TCTCTTTTAT CACCCTGGCC CTTCCTGAGA ATTCATCAGT CCCGTGTGGA
  GCAGGAGTCA GAATGAAAGC AGAGGCATCA AAATCAAAAG CAGCCATGGA GCAGGCTCAG
  GGGCCACATG CAGAGCAGGC TCGAGGGCCA CGTGCAGACT GCTTTCCTCT GCAGAGGCTG
  GGTGAGCTCA GGGCTGGTGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46992847	NES10880343	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30866165					SNP	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46992847	NES10880343	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:137657695 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dapp1	dual adaptor for phosphotyrosine and 3-phosphoinositides 1			Intron
				Noncoding-Transcript-Variant
Rr398063	regulatory region 398063			427 bp upstream
Rr586027	regulatory region 586027			1130 bp distal
Rr586028	regulatory region 586028			1391 bp distal
Rr586029	regulatory region 586029			within coordinates
Rr586030	regulatory region 586030			261 bp distal