rs30865667 SNP Detail

Summary

• ID
  rs30865667
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:137506874 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAGTCAGT TCTCCTACCA
  TGTGAGTTTC AGAGAATGAT CTCAGGTCTC CAAGGTAGGC AAAAAGAGCC TATACATGCT
  GAGCCATCTC TCTTATTATT AATATCCTTT TTAATAAAAC TATCTGAAAT ACAAATGTTA
  AAATGCAATA ACCCATGCTT AAAGCTAAAG TGTACATGCC TTTTTAGTTA AGCCTTGTTC
  Y
  TCTTCCAGCT AAACCTGGAC AAGATGATGG GCTTTGTAAT CAAGACATAG GTCTTAAGTG
  TCTCGTGGCC TTGTATAGTA AGGATTGCTT TAGCTTATCA CCCTGTACTC CTACCCAGTG
  CACCTTGGGG GGAAAAGGAA GGAAAGGGGG GAAGGAGGAA GGAAGGAAGG AAGGAAGGAT
  GGAAGGAAGG AAGGAAGGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46991811	NES10886605	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30865667					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46991811	NES10886605	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:137506874 () rs orientation: forward

Symbol	Name	Function Class
Gm31678	predicted gene, 31678	within coordinates
Rr585983	regulatory region 585983	417 bp proximal