rs30864821 SNP Detail

Summary

• ID
  rs30864821
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:137505726 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCAACATGA AGAAAGGTCT
  CTACATCTCT AGGAGACACC ATGAGTTAAT GGTGCATGCA AAGGTAAACC AAGGACCCCT
  ATGCTCAAAG GTTAGTACCA AGTGATGTCT ATTCAATGCA TTTGAAGGTG CTCCAGGGAG
  CACCTGCCAT CCCACCTGGG ATTCAACCTG AGAGTCTTCA TAGTAAAGTC AAAGAGACCT
  M
  CAGAAATCAT CTTCAACCAT CAGAAGCCAG CTGTATTTGT TTACTGGCTT TGTTTGTTTG
  TTCATTTGTT TGTTTTTGAG GCAGGCTCAC ATAAAGCTGG CTTTGAATTC TATAACTAAC
  CAAAGGTAAA CCTTTTCCAT CTGCCCCCAT TTCTGAATTG CTGGGATGCT TACTACACTC
  AATTCAAAGA TTTTAAACCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	CAST/EiJ	DBA/2J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46991805	NES10886685	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	A	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	CAST/EiJ	DBA/2J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30864821					SNP	C	C	C	A	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46991805	NES10886685	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:137505726 () rs orientation: forward

Symbol	Name	Function Class
Gm31678	predicted gene, 31678	within coordinates
Rr585983	regulatory region 585983	1565 bp proximal