rs30863534 SNP Detail

Summary

• ID
  rs30863534
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:134600263 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTTTAAAG GCCTCCGTGA
  ATGGCTTGAG TGGACCTCAG CTATTCCTTG CACTGCTGGT AGAGTGCTGT TGGAGCGTAG
  AGGGCATTCG GGGAGTCTAG GGCAAAGGGT GCGGATCTAA TCTAAGTACT CGCTTCTAGC
  TCTCACAACC TGCTTACAGA TTATCCCAAG ATAGATTGGT GCTTAGTGGA CGGGACTCGG
  Y
  TGTCTTCAGA CCCTTTCCTT AGGTGGTGAG TGCACTGTTA GTTCAGGCAG CTGCTTCTTT
  AGCAGGTTTC TTTGCAGGGC TGGACACTTA GAACCTTGCT CCACCCAGAC CTCTCTCCTT
  CCTGGTGACC TCAGATTGTC CCAGGAAGCC CACCTTGGTA GGCTGTCCTG GTCCCCTCCT
  ACCTCTCTCC ATTCTAGCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49677560	NES12989756	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30863534					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49677560	NES12989756	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:134600263 () rs orientation: forward

Symbol	Name	Function Class
Rr418973	regulatory region 418973	1879 bp proximal
Rr418974	regulatory region 418974	1960 bp proximal
Syt2	synaptotagmin II	Intron