rs30862420 SNP Detail

Summary

• ID
  rs30862420
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:133455955 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCAGAAGGT AGGTGCCAGA
  GTGCATAGCA TAGAGTAGTG GCTTAAAGAT ATCCAAGTCT GAGGGGGAAG TGATTGTGTT
  AGGAGATCTT AGAAGAGACC CGGGGAGATG GTGGCTGATG CTCTAGAGAA GTTGTAACGT
  TGGGCACTGG AAGAGGTAAA GCTTCCCTGC TTAGGAAACG GGGATGGAGA ACCAGGTACC
  Y
  GCAGGCAGCA GCTCACCGCT GAAGAGGAAC TGCTTTGTCT GTGATGTGTG AGCAAGGTCA
  TAGTTCAGAT GAGGTGATTG TACTGCATGT CAATAGCACG AAGTGGCTAC AGAGTGACAG
  TGAAATGGAG CTCACTGAGA GAAAAACATA GGACTTCCCA TAGGACAGGG GCTAAGCTGG
  CATCAGGCAT TCCAGGAATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45474982	mCV23615501	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	T	T
ss135918904	ENSMUSSNP1613716	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30862420					SNP	C	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:133455955 () rs orientation: forward

Symbol	Name	Function Class
Gm64379	predicted gene, 64379	640 bp upstream
Rr398038	regulatory region 398038	737 bp downstream
Rr585594	regulatory region 585594	667 bp distal
Rr585595	regulatory region 585595	566 bp distal
Rr585596	regulatory region 585596	903 bp proximal
Tssr35771	transcription start site region 35771	653 bp upstream