rs30862107 SNP Detail

Summary

• ID
  rs30862107
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:134601397 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTCGGGAA GCGTTCTTAA
  CCAGAAGTTC GCTATCCACC GCGCCAGCTC CCGAGTCTCC ATTTAAACCT CCCCCCCCTT
  ACTCCTCTGC CTCATGGTCT GCATCTTACT GAGTTGTGGG CCTGGTGACA CTTTTCCCAC
  AGGCCCACAT TCCAATTCTT CGCCCCTGCT TCCTCTCCTA AAGCAGAAGG GCTGGGTGGT
  R
  TTGGATCCAG GATCCAGCTG GCCAGTGCTG GTTTTCACGT TGCCTGCTTA TTGGATCGGG
  TTTGCTTTGT GCCTGACGGG GAGGCTGGTC CATGCTTGGC TCTGGGTTGA CTCGCCATCC
  TTATCTCTCA CTGCTCAGGA CCCTCTGAAG GCTTGGTCAG CTTGCACCGG ATGCAGGTCC
  TAAGTCCATG TTATGTCCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49677543	NES12989656	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30862107					SNP	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49677543	NES12989656	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:134601397 () rs orientation: forward

Symbol	Name	Function Class
Rr418973	regulatory region 418973	745 bp proximal
Rr418974	regulatory region 418974	826 bp proximal
Syt2	synaptotagmin II	Intron