rs30861675 SNP Detail

Summary

• ID
  rs30861675
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:119549626 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGTAGCACG TGAGAACCAT CTGGACTGAC TTCATCTCTC
  CTGAGAAAGA AATTGAGCCA ACACATTCTT CCCAGGAGGC CAAACGGATG GGACAGGACA
  Y
  GGCCAGCCAC AGCGTGACCT CCAACACCAC TGGTGGTCTT GTTCCAGTCT GCTCTCCTTG
  TTCCAGTGCT CTTCTAAAGC CCACTGGCGA GGAAGAGGT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss45972784	mCV22568826	ABI	CRAMUS_MOUSE	f	SNP	T	T	T				C		T
ss48076655	NES11868078	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	C		T	T	C	C		T	T	C
ss133591163	ENSMUSSNP445058	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						T
ss321928758	CHEV_6_119522683	CHEVERUD	SCREENING_POP	f	SNP												T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs30861675					SNP	T	T	T	T	T	C	C	T	T	C	C	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48076655	NES11868078	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:119549626 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Erc1	ELKS/RAB6-interacting/CAST family member 1			mRNA-UTR
				Noncoding-Transcript-Variant
Gm44317	predicted gene, 44317			within coordinates
Rr637716	regulatory region 637716			within coordinates