rs30861619 SNP Detail

Summary

• ID
  rs30861619
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:108040314 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCGT TAAACCTACA CATCGAGTAC
  M
  GGCCTTGGCA AAATATCAAG ATCCT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	LG/J	SM/J
ss45973523	mCV24060732	ABI	CRAMUS_MOUSE	f	SNP	C	A
ss133494187	ENSMUSSNP2121684	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss321891471	CHEV_6_108013347	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	LG/J	SM/J
rs30861619					SNP	C	A	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108040314 () rs orientation: forward

Symbol	Name	Function Class
Gm66771	predicted gene, 66771	within coordinates
Rr399804	regulatory region 399804	1540 bp upstream
Rr399805	regulatory region 399805	1846 bp upstream
Rr636028	regulatory region 636028	871 bp proximal
Rr636029	regulatory region 636029	1619 bp proximal
Rr636030	regulatory region 636030	1945 bp proximal
Setmar	SET domain without mariner transposase fusion	1692 bp upstream
Tssr58052	transcription start site region 58052	1682 bp upstream