rs30861376 SNP Detail

Summary

• ID
  rs30861376
• Variation Type
  SNP
• Alleles
  A/C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:134602329 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCAG AGCAACCCAG GCTGGGCTAA
  H
  AGGCTAGACC ACAGAGATAT AGACC                                      
  
  H = A/C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BALB/cByJ	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
ss49677532	NES12989607	PERLEGEN	MM_PANEL2	f	SNP			T	C			T	T	T
ss145511111	ENSMUSSNP1391617	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A			A
ss319983874	CHEV_1_136571168	CHEVERUD	SCREENING_POP	f	SNP						T				A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BALB/cByJ	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
rs30861376					SNP	A	A	T	C	A	T	T	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49677532	NES12989607	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:134602329 () rs orientation: forward

Symbol	Name	Function Class
Rr418973	regulatory region 418973	within coordinates
Rr418974	regulatory region 418974	85 bp distal
Syt2	synaptotagmin II	Intron