rs30861374 SNP Detail

Summary

• ID
  rs30861374
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:134602472 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGCCACAG GGGTGCTATC
  AGAACTTGTG TGGGCAGAGC AACCCAGGCT GGGCTAATAG GCTAGACCAC AGAGATATAG
  ACCAAGCACA TTGGTCTCTA TGGCCCCAAA CTTAATGGAC AGTGCTTGAA TCACTTGGCT
  GGCTACTTGC TGAAGCAGCT GATGAGGTAG GTCACAGGCT CAGATCTGAT CTCCAAAGGA
  K
  CTTAGTGGCT CTCAAGCAAG ATGCACAGCT CACTCTATGT TTCACAGGCT TGCTACCTTG
  CCTCTCTGTT GAGGTGGTAC AAAGACAGAC AGACAGACAG ACAGACAGAC AGACAGACAC
  ACACACACAC ACACACACAC ACAGAGGCAA TAGGCAGACA CACACAGTTC AGCTTGTTTT
  GTTGAAGCTG CTAGCCCTGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49677530	NES12989609	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30861374					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49677530	NES12989609	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:134602472 () rs orientation: forward

Symbol	Name	Function Class
Rr418973	regulatory region 418973	81 bp distal
Rr418974	regulatory region 418974	228 bp distal
Syt2	synaptotagmin II	Intron