rs30861016 SNP Detail

Summary

• ID
  rs30861016
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:143447339 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGCT GTGAGTTGCC TACCTCCATC
  Y
  CCAGTGATGA TGTTACAGGC ACCTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45472981	mCV23569333	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	T
ss136026087	ENSMUSSNP5303630	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		T
ss321005968	CHEV_3_143404542	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30861016					SNP	C	T	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:143447339 () rs orientation: forward

Symbol	Name	Function Class
Gm33867	predicted gene, 33867	1700 bp upstream
Gm42705	predicted gene 42705	1799 bp upstream
Rr586558	regulatory region 586558	1309 bp proximal
Rr586559	regulatory region 586559	1398 bp proximal
Rr586560	regulatory region 586560	1810 bp proximal