AGTTG CAAATGAAAG GCTTTCAGTG Y GAGTCTCTCA GAGATTCCAT TTAGT Y = C/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
129X1/SvJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
LG/J |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
SM/J |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss49677525 | NES12989574 | PERLEGEN | MM_PANEL2 | f | SNP | T | T | T | C | T | T | C | T | T | T | C | T | C | C | T | |||
ss145511148 | ENSMUSSNP3733068 | ENSEMBL | ENSEMBL_Sanger | f | SNP | T | T | T | |||||||||||||||
ss319983880 | CHEV_1_136571735 | CHEVERUD | SCREENING_POP | f | SNP | T | T | ||||||||||||||||
SNP Consensus Information | |||||||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
129X1/SvJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
LG/J |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
SM/J |
WSB/EiJ |
||||
rs30860699 | SNP | T | T | T | T | C | T | T | C | T | T | T | T | C | T | C | C | T | T |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss49677525 | NES12989574 | PERLEGEN | MM_PANEL | f | SNP | C/T |
Location: Chr1:134602896 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Rr418973 | regulatory region 418973 | 505 bp distal | ||||||
Rr418974 | regulatory region 418974 | 652 bp distal | ||||||
Syt2 | synaptotagmin II | Intron |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/25/2025 MGI 6.24 |
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