rs30860672 SNP Detail

Summary

• ID
  rs30860672
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:119548096 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTCAAGCTAC AGGAAGCCAG TGCCCAACGT TCTGGGTTCC
  CCACTAAAGT GCAACATGCC TCTTCTGAAG TAGGGGTGCA GAGAAACGTC CCCATCCCCG
  K
  CCTAGGTTTC TAGTCTGCAC TGGGCAGCTG GGCCACTGAA TGGCATGTGC CTCAGGTGGG
  ACTAGATGCT TTAAAGAATG GGTGTAATAC TGGTGTGGC                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	LG/J	SM/J
ss45973604	mCV22718013	ABI	CRAMUS_MOUSE	f	SNP	T	T	G
ss133591151	ENSMUSSNP1283094	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
ss321928754	CHEV_6_119521153	CHEVERUD	SCREENING_POP	f	SNP				T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	LG/J	SM/J
rs30860672					SNP	T	T	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:119548096 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Erc1	ELKS/RAB6-interacting/CAST family member 1			mRNA-UTR
				Noncoding-Transcript-Variant
Gm44317	predicted gene, 44317			within coordinates
Rr637716	regulatory region 637716			1072 bp proximal